ABAQUS's ABAQUS ABRicate's ABRicate ABySS's ABySS ACLs ACL ACTC's ACTC AGAT's AGAT AGE's AGE AMOS's AMOS AMRFinderPlus's AMRFinderPlus ANIcalculator's ANIcalculator ANNOVAR's ANNOVAR ANSYS's ANSYS ANTLR's ANTLR ANTS's ANTS ANTs's ANTs AOCC's AOCC AOCL AOCL-BLIS's AOCL-BLIS AOCL-FFTW's AOCL-FFTW AOCL-ScaLAPACK's AOCL-ScaLAPACK APR's APR APR-util's APR-util ARIBA's ARIBA ASAGI's ASAGI ATK's ATK ATL AUGUSTUS's AUGUSTUS Abseil's Abseil AdapterRemoval's AdapterRemoval AdaptiveCpp's AdaptiveCpp Advisor's Advisor AgResearch Allinea AlphaFold's AlphaFold AlphaFold2DB's AlphaFold2DB AlwaysIntelMKL's AlwaysIntelMKL Amdahl Anaconda2's Anaconda2 Anaconda3's Anaconda3 Aotearoa Apache Apptainer's Apptainer Armadillo's Armadillo Arrow's Arrow Aspera Aspera-CLI's Aspera-CLI AutoDock AutoDock-GPU's AutoDock-GPU AutoDock_Vina's AutoDock_Vina Autoconf-archive's Autoconf-archive BBMap's BBMap BCFtools's BCFtools BCL-Convert's BCL-Convert BEAST's BEAST BEDOPS's BEDOPS BEDTools's BEDTools BEEF's BEEF BGC-Bayesian-genomic-clines's BGC-Bayesian-genomic-clines BLAS BLAST's BLAST BLASTDB's BLASTDB BLAT's BLAT BLIS's BLIS BOLT-LMM's BOLT-LMM BRAKER's BRAKER BUSCO's BUSCO BWA's BWA BamTools's BamTools Bandage's Bandage Basilisk's Basilisk BayPass's BayPass BayeScan's BayeScan BayesAss's BayesAss Bazel's Bazel Beagle's Beagle BiG-SCAPE's BiG-SCAPE Bifrost's Bifrost Bio-DB-BigFile's Bio-DB-BigFile Bio-DB-HTS's Bio-DB-HTS BioPP's BioPP Bioconductor Bismark's Bismark Bison's Bison BlenderPy's BlenderPy Boost's Boost Bourne Bowtie's Bowtie Bowtie2's Bowtie2 Bpipe's Bpipe Bracken's Bracken BreakSeq2's BreakSeq2 Broadwell Bruijn CAE CCL's CCL CD-HIT's CD-HIT CDO's CDO CESM CFD CFITSIO's CFITSIO CGAL's CGAL CLI CMIP CMake's CMake CNVnator's CNVnator CNVpytor's CNVpytor COMSOL's COMSOL CONCOCT's CONCOCT CP2K's CP2K CPE CPMD's CPMD CPUs's CPUs CPU's CPU CRAMINO's CRAMINO CRI CRLF CTPL's CTPL CUDA's CUDA CUnit's CUnit CWL Canu's Canu CapnProto's CapnProto Catch2's Catch2 CellRanger's CellRanger CentOS Centos Centrifuge's Centrifuge Cereal's Cereal Charm++'s Charm++ CheckM's CheckM CheckM2's CheckM2 CheckV's CheckV Circlator's Circlator Circos's Circos Clair3's Clair3 Clang's Clang Clustal-Omega's Clustal-Omega ClustalW2's ClustalW2 Conda Corset's Corset CoverM's CoverM CppUnit's CppUnit CrayCCE's CrayCCE CrayGNU's CrayGNU CrayIntel's CrayIntel CubeGUI's CubeGUI CubeLib's CubeLib CubeWriter's CubeWriter Cufflinks's Cufflinks Cylc Cytoscape's Cytoscape D-Genies's D-Genies DAS_Tool's DAS_Tool DB's DB DBus's DBus DCV DFT-D4's DFT-D4 DIAMOND's DIAMOND DISCOVARdenovo's DISCOVARdenovo DRAM's DRAM DTNs's DTNs DTN's DTN DVS DaliLite's DaliLite Dask DeconSeq's DeconSeq DeePMD-kit's DeePMD-kit DeepLabCut's DeepLabCut DefaultModules's DefaultModules Delft3D's Delft3D Delft3D_FM's Delft3D_FM Delly's Delly Dorado's Dorado Doxygen's Doxygen Dsuite's Dsuite EDTA's EDTA EIGENSOFT's EIGENSOFT ELPA's ELPA EMAN2's EMAN2 EMBOSS's EMBOSS ENMTML's ENMTML EOL ESMF's ESMF ETE's ETE EasyBuild's EasyBuild Easybuild Eigen's Eigen Embree's Embree EukRep-EukCC's EukRep-EukCC ExaBayes's ExaBayes ExaML's ExaML ExpansionHunter's ExpansionHunter Extrae's Extrae FALCON's FALCON FASTA FASTQ FASTX-Toolkit's FASTX-Toolkit FCM's FCM FDS's FDS FEA FENSAP FFTW's FFTW FFTW.MPI's FFTW.MPI FFmpeg's FFmpeg FIGARO's FIGARO FLTK's FLTK FTE FTGL's FTGL FastANI's FastANI FastME's FastME FastQC's FastQC FastQ_Screen's FastQ_Screen FastTree's FastTree File-Rename's File-Rename Filtlong's Filtlong FimTyper's FimTyper FlexiBLAS's FlexiBLAS Flye's Flye Fortran FragGeneScan's FragGeneScan FreeBayes's FreeBayes FreeSurfer's FreeSurfer FreeXL's FreeXL FriBidi's FriBidi GATK's GATK GCC's GCC GCCcore's GCCcore GD's GD GDAL's GDAL GDB GDC GEMMA's GEMMA GEOS's GEOS GFortran GLM's GLM GLPK's GLPK GLib's GLib GMAP-GSNAP's GMAP-GSNAP GMP's GMP GMT's GMT GNU GOLD's GOLD GObject-Introspection's GObject-Introspection GPAW's GPAW GPFS's GPFS GPG GPGPUs GPGPU GPUs GPU GRADS's GRADS GRASS's GRASS GRIDSS's GRIDSS GROMACS's GROMACS GSL's GSL GST-plugins-base's GST-plugins-base GStreamer's GStreamer GTDB-Tk's GTDB-Tk GTK GTK+'s GTK+ GTS's GTS GUIs GUI GUSHR's GUSHR Gaussian's Gaussian Gbps Gdk-Pixbuf's Gdk-Pixbuf GeneMark GeneMark-ES's GeneMark-ES GenoVi's GenoVi GenomeThreader's GenomeThreader Gerris's Gerris GetOrganelle's GetOrganelle GitHub GitLab Glib GlimmerHMM's GlimmerHMM Globus GlobusID Go's Go Graphviz's Graphviz GridRunner Gubbins's Gubbins Guile's Guile HCS HDF's HDF HDF-EOS's HDF-EOS HDF-EOS5's HDF-EOS5 HDF5's HDF5 HGX HISAT2's HISAT2 HMMER's HMMER HMMER2's HMMER2 HOPS's HOPS HPCs HPC HTSeq's HTSeq HTSlib's HTSlib HTTPS HarfBuzz's HarfBuzz HpcGridRunner's HpcGridRunner Humann's Humann HybPiper's HybPiper Hypre's Hypre IBM ICU's ICU IDBA-UD's IDBA-UD IDL's IDL IGV's IGV IMPUTE's IMPUTE IOBUF IQ-TREE's IQ-TREE IQmol's IQmol IRkernel's IRkernel ISA-L's ISA-L Illumina ImagMagick ImageMagick's ImageMagick Infernal's Infernal InfiniBand Inspector's Inspector InterProScan's InterProScan JAGS's JAGS JSON JUnit's JUnit JasPer's JasPer Java's Java Jellyfish's Jellyfish Jinja JsonCpp's JsonCpp Julia's Julia Jupyter JupyterHub JupyterLab's JupyterLab KAT's KAT KEALib's KEALib KMC's KMC KNP Kaiju's Kaiju Kent_tools's Kent_tools Keras Keycloak KmerGenie's KmerGenie KorfSNAP's KorfSNAP Kraken Kraken2's Kraken2 KronaTools's KronaTools KyotoCabinet's KyotoCabinet LAME's LAME LAMMPS's LAMMPS LAPACK LAST's LAST LASTZ's LASTZ LDC's LDC LEfSe's LEfSe LF LINKS's LINKS LLVM's LLVM LMDB's LMDB LSD2's LSD2 LTR_retriever's LTR_retriever LTS LUMPY's LUMPY LZO's LZO Landcare LegacySystemLibs's LegacySystemLibs LibTIFF's LibTIFF Libint's Libint Liftoff's Liftoff LittleCMS's LittleCMS Lmod LongStitch's LongStitch M4's M4 MAFFT's MAFFT MAGMA's MAGMA MAKER's MAKER MATIO's MATIO MATLAB's MATLAB MBIE's MBIE MCL's MCL MCR's MCR MD5 MEGAHIT's MEGAHIT METABOLIC's METABOLIC METIS's METIS MKL MMseqs2's MMseqs2 MOB-suite's MOB-suite MODFLOW's MODFLOW MPFR's MPFR MPI MSMC's MSMC MUMPS's MUMPS MUMmer's MUMmer MUSCLE's MUSCLE MUST's MUST MWLR MaSuRCA's MaSuRCA MacOS Magma's Magma Mahuika's Mahuika Mamba's Mamba Manaaki MarkerMiner's MarkerMiner Marsden Mash's Mash MashMap's MashMap Maven's Maven MaxBin's MaxBin Merqury's Merqury Mesa's Mesa Meson's Meson MetaBAT's MetaBAT MetaEuk's MetaEuk MetaGeneAnnotator's MetaGeneAnnotator MetaPhlAn's MetaPhlAn MetaPhlAn2's MetaPhlAn2 MetaSV's MetaSV Metashape's Metashape Metaxa2's Metaxa2 MiMiC's MiMiC MiMiC-CommLib's MiMiC-CommLib Milan Miniconda Miniconda3's Miniconda3 Minimac3's Minimac3 Minimac4's Minimac4 MitoZ's MitoZ MobaXterm ModDotPlot's ModDotPlot ModelTest-NG's ModelTest-NG Molcas's Molcas Molpro's Molpro Mono's Mono Monocle3's Monocle3 Mothur's Mothur MrBayes's MrBayes Mule's Mule MultiQC's MultiQC Māui's Māui NAMD's NAMD NASM's NASM NCCL's NCCL NCL's NCL NCO's NCO NCVIEW's NCVIEW NECAT's NECAT NGS's NGS NIWA's NIWA NLopt's NLopt NONMEM's NONMEM NSPR's NSPR NSS's NSS NVHPC's NVHPC NVLink NWChem's NWChem NZ NZD NZDT NZST Nano NanoComp's NanoComp NanoLyse's NanoLyse NanoPlot's NanoPlot NanoStat's NanoStat Nanopore NeSI's NeSI New Zealander NewHybrids's NewHybrids Newton-X's Newton-X NextGenMap's NextGenMap Nextflow's Nextflow Nim's Nim Ninja's Ninja Nsight Nsight-Compute's Nsight-Compute Nsight-Systems's Nsight-Systems Nvidia OASIS3-MCT's OASIS3-MCT OBITools's OBITools OCI's OCI OMA's OMA OMP OOM OPARI2's OPARI2 ORCA's ORCA OSPRay's OSPRay OSU-Micro-Benchmarks's OSU-Micro-Benchmarks OSX OTF2's OTF2 Octave's Octave OneDrive OpenACC OpenBLAS's OpenBLAS OpenBabel's OpenBabel OpenCV's OpenCV OpenFAST's OpenFAST OpenFOAM's OpenFOAM OpenGL OpenJPEG's OpenJPEG OpenMP OpenMPI's OpenMPI OpenSSH OpenSSL's OpenSSL OpenSees's OpenSees OpenSeesPy's OpenSeesPy OpenSlide's OpenSlide OrfM's OrfM OrthoFiller's OrthoFiller OrthoFinder's OrthoFinder OrthoMCL's OrthoMCL Otago PALEOMIX's PALEOMIX PAML's PAML PAPI's PAPI PCIe PCRE's PCRE PCRE2's PCRE2 PDT's PDT PEAR's PEAR PEST++'s PEST++ PETSc's PETSc PFR PHASIUS's PHASIUS PLINK's PLINK PLUMED's PLUMED POSIX PRANK's PRANK PROJ's PROJ PSpaMM's PSpaMM PUMI's PUMI PacBio Pango's Pango ParMETIS's ParMETIS ParaView's ParaView Parallel's Parallel ParallelIO's ParallelIO Paraver's Paraver Peregrine's Peregrine Perl's Perl PhyML's PhyML PhyloPhlAn's PhyloPhlAn Pilon's Pilon Pletzer PnetCDF's PnetCDF Porechop's Porechop PostgreSQL's PostgreSQL PowerShell Prodigal's Prodigal ProtHint's ProtHint Proteinortho's Proteinortho PuTTY PyOpenGL's PyOpenGL PyQt's PyQt PyTorch's PyTorch Python's Python Python-Geo's Python-Geo QChem's QChem QIIME2's QIIME2 QUAST's QUAST QoS Qt5's Qt5 QuantumESPRESSO's QuantumESPRESSO QuickTree's QuickTree R's R R-Geo's R-Geo R-bundle-Bioconductor's R-bundle-Bioconductor RANGS-GSHHS's RANGS-GSHHS RAxML's RAxML RAxML-NG's RAxML-NG RDP-Classifier's RDP-Classifier RE2's RE2 REANNZ RECON's RECON REViewer's REViewer RFPlasmid's RFPlasmid RFdiffusion's RFdiffusion RMBlast's RMBlast RNAmmer's RNAmmer ROCm's ROCm ROOT's ROOT RSEM's RSEM RSGISLib's RSGISLib RStudio Racon's Racon Ragout's Ragout RapidNJ's RapidNJ Raven's Raven Rcorrector's Rcorrector Relion's Relion RepeatMasker's RepeatMasker RepeatModeler's RepeatModeler RepeatScout's RepeatScout Riskscape's Riskscape Roary's Roary Rosetta's Rosetta Rstudio's Rstudio Ruby's Ruby Rust's Rust SAGE's SAGE SAMtools's SAMtools SAS's SAS SCOTCH's SCOTCH SCP SCons's SCons SDL2's SDL2 SEPP's SEPP SFTP SHA-1 SHA-256 SHAPEIT4's SHAPEIT4 SIF SIONlib's SIONlib SIP's SIP SKESA's SKESA SMRT-Link's SMRT-Link SNVoter-NanoMethPhase's SNVoter-NanoMethPhase SOCI's SOCI SPAdes's SPAdes SPECFEM3D's SPECFEM3D SPIDER's SPIDER SQLite's SQLite SQLplus's SQLplus SSAHA2's SSAHA2 SSH SSHFS SSIF STAR's STAR STAR-Fusion's STAR-Fusion SUNDIALS's SUNDIALS SURVIVOR's SURVIVOR SWIG's SWIG Salmon's Salmon Sambamba's Sambamba ScaLAPAC ScaLAPACK's ScaLAPACK Scalasca's Scalasca Schrödinger Score-P's Score-P SeisSol's SeisSol SeqAn's SeqAn SeqAn3's SeqAn3 SeqKit's SeqKit SiBELia's SiBELia Siesta's Siesta SignalP's SignalP Singularity's Singularity Skylake Slurm Sniffles's Sniffles SortMeRNA's SortMeRNA SourceTracker's SourceTracker Spack's Spack Spark's Spark Spectrum Scale's Spectrum Scale SquashFS SqueezeMeta's SqueezeMeta Stacks's Stacks StringTie's StringTie Structure's Structure Subread's Subread Subversion's Subversion SuiteSparse's SuiteSparse SuperLU's SuperLU Supernova's Supernova Synda Szip's Szip TEtranscripts's TEtranscripts TMHMM's TMHMM TOGA's TOGA TRES TSEBRA's TSEBRA TURBOMOLE's TURBOMOLE TWL-NINJA's TWL-NINJA TZ Tamaki Tcl's Tcl TensorFlow's TensorFlow TensorRT's TensorRT Theano's Theano Tk's Tk TransDecoder's TransDecoder Transrate's Transrate TreeMix's TreeMix TrimGalore's TrimGalore Trimmomatic's Trimmomatic Trinity's Trinity Trinotate's Trinotate Trycycler's Trycycler Tuakiri TuiView's TuiView TurboVNC's TurboVNC UCC's UCC UCX's UCX UDF UDUNITS's UDUNITS UI USEARCH's USEARCH UTF UUID Unicycler's Unicycler UoA VASP's VASP VCF-kit's VCF-kit VCFtools's VCFtools VEP's VEP VESTA's VESTA VIBRANT's VIBRANT VMs's VMs VM's VM VMD's VMD VNC VPN VSCode VSEARCH's VSEARCH VTK's VTK VTune's VTune Valgrind's Valgrind VarScan's VarScan Velvet's Velvet VelvetOptimiser's VelvetOptimiser ViennaRNA's ViennaRNA Vim's Vim VirHostMatcher's VirHostMatcher VirSorter's VirSorter VirtualGL's VirtualGL VisIt's VisIt WAAFLE's WAAFLE WCRP WRF WSL WhatsHap's WhatsHap Whenua WinSCP Winnowmap's Winnowmap Wise2's Wise2 XC XCONV's XCONV XHMM's XHMM XIOS's XIOS XMDS2's XMDS2 XSD's XSD XVFB XZ's XZ Xeon Xerces Xerces-C++'s Xerces-C++ Xming YAML YAXT's YAXT Yasm's Yasm Z3's Z3 Zealander Zendesk ZeroMQ's ZeroMQ Zip's Zip abritamr's abritamr admonition analytics angsd's angsd annum ant's ant antiSMASH's antiSMASH any2fasta's any2fasta argtable's argtable aria2's aria2 arpack-ng's arpack-ng at-spi2-atk's at-spi2-atk at-spi2-core's at-spi2-core attr's attr authenticators's authenticators authenticator's authenticator azul-zulu's azul-zulu backplane bamUtil's bamUtil barrnap's barrnap basecaller bcl2fastq2's bcl2fastq2 beagle-lib's beagle-lib benchmark benchmarking best's best binutils's binutils bioawk's bioawk biomolecules biomolecule breseq's breseq bsddb3's bsddb3 bzip2's bzip2 c-ares's c-ares cURL's cURL cairo's cairo cdbfasta's cdbfasta cdt's cdt checkpointing checksums checksum chewBBACA's chewBBACA chiplets chopper's chopper collapsable compleasm's compleasm conda config craype cromwell's cromwell cron crontab ctags's ctags ctffind's ctffind ctrl cuDNN's cuDNN customisable customisations cutadapt's cutadapt cuteSV's cuteSV cwltool's cwltool cyvcf2's cyvcf2 dadi's dadi dammit's dammit datasets's datasets dataset deepTools's deepTools deprioritised dereference devtools's devtools double-conversion's double-conversion drep's drep dtcmp's dtcmp duphold's duphold duplex-tools's duplex-tools eDNA's eDNA eScience easi's easi ecCodes's ecCodes eccodes's eccodes ectyper's ectyper edlib's edlib eggnog-mapper's eggnog-mapper emmtyper's emmtyper ensmallen's ensmallen entrez-direct's entrez-direct exes exe executables executable exonerate's exonerate expat's expat fairshare fastStructure's fastStructure fastp's fastp fastq-tools's fastq-tools fcGENE's fcGENE fgbio's fgbio filesets fileset filesystems filesystem fineRADstructure's fineRADstructure fineSTRUCTURE's fineSTRUCTURE flatbuffers's flatbuffers flex's flex fmlrc's fmlrc fmt's fmt fontconfig's fontconfig forge's forge foss's foss freetype's freetype funcx-endpoint's funcx-endpoint fxtract's fxtract g2clib's g2clib g2lib's g2lib ga4gh's ga4gh geany's geany genometools's genometools genomics genomic genotypes genotype genotyping gettext's gettext gfastats's gfastats gffread's gffread giflib's giflib gimkl's gimkl gimpi's gimpi git's git glob globbing globus-automate-client's globus-automate-client globus-compute-endpoint's globus-compute-endpoint gmsh's gmsh gnuplot's gnuplot gompi's gompi google-sparsehash's google-sparsehash googletest's googletest gperf's gperf grib_api's grib_api grive2's grive2 gsort's gsort h5pp's h5pp haplocheck's haplocheck hapū help2man's help2man hifiasm's hifiasm hunspell's hunspell hwloc's hwloc hyperthreaded hyperthreading hypothesis's hypothesis icc's icc iccifort's iccifort ifort's ifort iimpi's iimpi imkl's imkl imkl-FFTW's imkl-FFTW impalajit's impalajit impi's impi in situ inodes inode intel's intel intel-compilers's intel-compilers ipyrad's ipyrad ispc's ispc iwi jbigkit's jbigkit jcvi's jcvi jemalloc's jemalloc jq's jq json-c's json-c jvarkit's jvarkit kaitiakitanga kalign2's kalign2 kallisto's kallisto kia kineto's kineto kma's kma libFLAME's libFLAME libGLU's libGLU libKML's libKML libStatGen's libStatGen libarchive's libarchive libcircle's libcircle libdeflate's libdeflate libdrm's libdrm libdwarf's libdwarf libepoxy's libepoxy libevent's libevent libffi's libffi libgcrypt's libgcrypt libgd's libgd libgeotiff's libgeotiff libgit2's libgit2 libglvnd's libglvnd libgpg-error's libgpg-error libgpuarray's libgpuarray libgtextutils's libgtextutils libiconv's libiconv libio libjpeg-turbo's libjpeg-turbo libmatheval's libmatheval libpciaccess's libpciaccess libpmi's libpmi libpng's libpng libreadline's libreadline libspatialite's libspatialite libtool's libtool libunistring's libunistring libunwind's libunwind libvdwxc's libvdwxc libvpx's libvpx libxc's libxc libxml2's libxml2 libxslt's libxslt libxsmm's libxsmm libzstd's libzstd lighttpd's lighttpd likwid's likwid localhost lockdown lp_solve's lp_solve lwgrp's lwgrp lz4's lz4 maf_stream's maf_stream magma's magma makedepend's makedepend manta's manta mapDamage's mapDamage meRanTK's meRanTK medaka's medaka megalodon's megalodon metaWRAP's metaWRAP metagenomics metagenomic miRDeep2's miRDeep2 microarchitecture midl's midl mihi mimalloc's mimalloc miniBUSCO's miniBUSCO miniasm's miniasm minimap2's minimap2 miniprot's miniprot mjpegtools's mjpegtools mlpack's mlpack mo_tidl's mo_tidl modbam2bed's modbam2bed modkit's modkit mosdepth's mosdepth mpi4py's mpi4py mpifileutils's mpifileutils muParser's muParser multithread multithreaded multithreading namespaces namespace nano's nano nanoQC's nanoQC nanofilt's nanofilt nanoget's nanoget nanomath's nanomath nanopolish's nanopolish nav ncbi-vdb's ncbi-vdb nccmp's nccmp ncurses's ncurses ncview's ncview ne's ne nearline's nearline netCDF's netCDF netCDF-C++'s netCDF-C++ netCDF-C++4's netCDF-C++4 netCDF-Fortran's netCDF-Fortran nga ngā nobackup nodejs's nodejs nseg's nseg nsync's nsync nullarbor's nullarbor numactl's numactl onboarding ont-guppy-gpu's ont-guppy-gpu ora padloc's padloc pairtools's pairtools panaroo's panaroo pandoc's pandoc parallel-fastq-dump's parallel-fastq-dump parallelisation parallelise parasail's parasail patchelf's patchelf pauvre's pauvre pfunit's pfunit pggb's pggb pgge's pgge phylogenetics phylogenetic phyx's phyx picard's picard pigz's pigz pixman's pixman pod5's pod5 pplacer's pplacer precompiled preseq's preseq procurements procurement prodigal's prodigal prodigal-gv's prodigal-gv profilers's profilers profiler's profiler programmatically programmes programme prokka's prokka protobuf's protobuf psmc's psmc pstoedit's pstoedit pullseq's pullseq purge_dups's purge_dups purge_haplotigs's purge_haplotigs pv's pv pyani's pyani pycoQC's pycoQC pymol-open-source's pymol-open-source pyseer's pyseer pyspoa's pyspoa qcat's qcat rDock's rDock randfold's randfold rasusa's rasusa razers3's razers3 rclone's rclone re2c's re2c repos repo reproducibility requeued rkcommon's rkcommon rnaQUAST's rnaQUAST rollout rsync's rsync runtime rust-fmlrc's rust-fmlrc samblaster's samblaster samclip's samclip savvy's savvy sbt's sbt sc-RNA's sc-RNA scalable screen_assembly's screen_assembly seqmagick's seqmagick seqtk's seqtk setgid shrinkwrap's shrinkwrap shumlib's shumlib simuG's simuG sismonr's sismonr slow5tools's slow5tools smafa's smafa smoove's smoove snakemake's snakemake snaphu's snaphu snappy's snappy snp-sites's snp-sites snpEff's snpEff somalier's somalier spaln's spaln spdlog's spdlog splat's splat spoa's spoa sratoolkit's sratoolkit srun srun-wrapper's srun-wrapper stderr stdin stdout subdirectorys subdirectory sublime's sublime sudo supercomputers supercomputer supercomputings supercomputing swarm's swarm swissknife's swissknife symlink tRNAscan-SE's tRNAscan-SE tabix's tabix tabixpp's tabixpp tbb's tbb tbl2asn's tbl2asn templating tmpfs tmux's tmux toolchains toolchain tooltips's tooltips tooltip's tooltip transcriptomes transcriptome trf's trf trimAl's trimAl um2netcdf's um2netcdf unallocated unimap's unimap unmount unrar's unrar util-linux's util-linux validator vcflib's vcflib vectorisation verkko's verkko vg's vg walltimes walltime wgsim's wgsim wheel's wheel wtdbg's wtdbg wxWidgets's wxWidgets x264's x264 x265's x265 xkbcommon's xkbcommon xtb's xtb yacrd's yacrd yajl's yajl yak's yak yaml-cpp's yaml-cpp zlib's zlib zstd's zstd