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ABAQUS
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Apptainer
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Bandage
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CheckM
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Circos
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Clang
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Flye
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GetOrganelle
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Go
Graphviz's
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HGX
HISAT2's
HISAT2
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Keycloak
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LibTIFF
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Mashtree
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Maven
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MaxBin
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Mesa
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Meson
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MetaBAT
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MetaEuk
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Miniconda
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PAML
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PEAR
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PETSc
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PLINK
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PLUMED
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PRANK
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PROJ
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PacBio
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Pango
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Parallel's
Parallel
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QuantumESPRESSO
QuickTree's
QuickTree
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R
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REANNZ
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RECON
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REViewer
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RFPlasmid
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RFdiffusion
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RJMCMC
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RMBlast
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RNAmmer
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ROOT
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RSEM
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RSGISLib
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RapidNJ
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Ratatosk
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Rosetta's
Rosetta
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Ruby
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SKESA
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SLEPc
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SQLite
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STAR
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SUNDIALS
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SWIG
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Sambamba
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ScaLAPACK
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SeisSol's
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SeqAn
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SeqKit
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Siesta
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SignalP
Singularity's
Singularity
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Sniffles
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SortMeRNA
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SourceTracker
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Spack
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Spark
SpectrA's
SpectrA
Spectrum Scale's
Spectrum Scale
SquashFS
SqueezeMeta's
SqueezeMeta
Stacks's
Stacks
StringTie's
StringTie
Structure's
Structure
Subread's
Subread
Subversion's
Subversion
SuiteSparse's
SuiteSparse
SuperLU's
SuperLU
Supernova's
Supernova
Synda
Szip's
Szip
TEtranscripts's
TEtranscripts
TMHMM's
TMHMM
TOGA's
TOGA
TRES
TSEBRA's
TSEBRA
TURBOMOLE's
TURBOMOLE
TWL-NINJA's
TWL-NINJA
TZ
Tamaki
Tcl's
Tcl
TensorFlow's
TensorFlow
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TensorRT
Tk's
Tk
TransDecoder's
TransDecoder
TreeMix's
TreeMix
TrimGalore's
TrimGalore
Trimmomatic's
Trimmomatic
Trinity's
Trinity
Trinotate's
Trinotate
Trycycler's
Trycycler
Tuakiri
TuiView's
TuiView
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TurboVNC
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UCX
UDF
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UDUNITS
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USEARCH's
USEARCH
UTF
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Unicycler's
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VASP
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VBZ-Compression
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Valgrind
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VarScan
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Velvet
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VelvetOptimiser
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Vim
VirHostMatcher's
VirHostMatcher
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VirSorter
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WhatsHap's
WhatsHap
Whenua
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Winnowmap's
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Wise2
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Yasm's
Yasm
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Zealander
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ZeroMQ's
ZeroMQ
Zip's
Zip
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ant's
ant
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antiSMASH
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any2fasta
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argtable
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aria2
arpack-ng's
arpack-ng
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attr's
attr
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bcl2fastq2
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best
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biomolecule
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breseq
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chewBBACA
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chopper
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config
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cron
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csvtk
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ctrl
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cutadapt
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cyvcf2
dadi's
dadi
datasets's
datasets
dataset
deepTools's
deepTools
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dtcmp
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duphold
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duplex-tools
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eDNA
eScience
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easi
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ecCodes
edlib's
edlib
eggnog-mapper's
eggnog-mapper
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emmtyper
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ensmallen
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entrez-direct
exes
exe
executables
executable
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exonerate
expat's
expat
fairshare
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fastStructure
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fastp
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fastq-tools
fgbio's
fgbio
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fileset
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filesystem
findable
fineSTRUCTURE's
fineSTRUCTURE
flatbuffers's
flatbuffers
flex's
flex
fmt's
fmt
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fontconfig
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forge
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foss
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freetype
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funcx-endpoint
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g2clib
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geany
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giflib
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git's
git
glob
globbing
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globus-compute-endpoint
gmsh's
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gnuplot's
gnuplot
gompi's
gompi
google-sparsehash's
google-sparsehash
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googletest
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gperf
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h5pp
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haplocheck
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hwloc
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hyperthreading
icc's
icc
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iccifort
ifort's
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imkl's
imkl
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imkl-FFTW
impalajit's
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impi's
impi
in situ
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info
inodes
inode
intel's
intel
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intel-compilers
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iofbf
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iompi
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iwi
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jbigkit
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jcvi
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jemalloc
jq's
jq
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kalign2
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kineto
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kma
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libFLAME
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libgit2
libglvnd's
libglvnd
libgpg-error's
libgpg-error
libgpuarray's
libgpuarray
libgtextutils's
libgtextutils
libiconv's
libiconv
libio
libjpeg-turbo's
libjpeg-turbo
libpciaccess's
libpciaccess
libpmi's
libpmi
libpng's
libpng
libreadline's
libreadline
libsodium's
libsodium
libspatialite's
libspatialite
libtool's
libtool
libunwind's
libunwind
libvdwxc's
libvdwxc
libxc's
libxc
libxml2's
libxml2
libxslt's
libxslt
libxsmm's
libxsmm
libzstd's
libzstd
lighttpd's
lighttpd
likwid's
likwid
linkers
linker
localhost
lockdown
logs's
logs
lp_solve's
lp_solve
lwgrp's
lwgrp
lz4's
lz4
maf_stream's
maf_stream
magma's
magma
manta's
manta
mapDamage's
mapDamage
matlab-proxy's
matlab-proxy
md
medaka's
medaka
megalodon's
megalodon
metaWRAP's
metaWRAP
metagenomics
metagenomic
miRDeep2's
miRDeep2
microarchitecture
mihi
miniBUSCO's
miniBUSCO
miniasm's
miniasm
minimap2's
minimap2
miniprot's
miniprot
modbam2bed's
modbam2bed
modkit's
modkit
mosdepth's
mosdepth
mpcci's
mpcci
muParser's
muParser
multithread
multithreaded
multithreading
namespaces
namespace
nano's
nano
nanoQC's
nanoQC
nanofilt's
nanofilt
nanoget's
nanoget
nanomath's
nanomath
nanopolish's
nanopolish
nav
ncbi-vdb's
ncbi-vdb
ncurses's
ncurses
ncview's
ncview
ne's
ne
nearline's
nearline
netCDF's
netCDF
netCDF-C++'s
netCDF-C++
netCDF-C++4's
netCDF-C++4
netCDF-Fortran's
netCDF-Fortran
nga
ngā
nobackup
nodejs's
nodejs
nseg's
nseg
nsync's
nsync
nullarbor's
nullarbor
numactl's
numactl
objects's
objects
onboarding
ont-guppy-gpu's
ont-guppy-gpu
ora
padloc's
padloc
pairtools's
pairtools
panaroo's
panaroo
pandoc's
pandoc
parallel-fastq-dump's
parallel-fastq-dump
parallelisation
parallelise
patchelf's
patchelf
pauvre's
pauvre
pggb's
pggb
pgge's
pgge
phonopy's
phonopy
phylogenetics
phylogenetic
phyx's
phyx
picard's
picard
pigz's
pigz
pixman's
pixman
pod5's
pod5
pplacer's
pplacer
precompiled
prepend
prepending
preseq's
preseq
procurements
procurement
prodigal's
prodigal
prodigal-gv's
prodigal-gv
profilers's
profilers
profiler's
profiler
programmatically
programmes
programme
prokka's
prokka
protobuf's
protobuf
psmc's
psmc
pstoedit's
pstoedit
pullseq's
pullseq
purge_dups's
purge_dups
purge_haplotigs's
purge_haplotigs
pv's
pv
pyani's
pyani
pycoQC's
pycoQC
pymol-open-source's
pymol-open-source
qcat's
qcat
randfold's
randfold
rasusa's
rasusa
rclone's
rclone
re2c's
re2c
recurse
refs's
refs
repos
repo
reproducibility
requeued
rnaQUAST's
rnaQUAST
roadmap
rollout
rsync
runtime
samblaster's
samblaster
sbt's
sbt
sc-RNA's
sc-RNA
scalable
screen_assembly's
screen_assembly
seqmagick's
seqmagick
seqtk's
seqtk
setgid
shrinkwrap's
shrinkwrap
simuG's
simuG
sismonr's
sismonr
skani's
skani
slow5tools's
slow5tools
smoove's
smoove
snakemake's
snakemake
snappy's
snappy
snp-sites's
snp-sites
snpEff's
snpEff
somalier's
somalier
spaln's
spaln
spdlog's
spdlog
splat's
splat
spoa's
spoa
sratoolkit's
sratoolkit
srun
srun-wrapper's
srun-wrapper
stderr
stdin
stdout
subdirectorys
subdirectory
sublime's
sublime
sudo
supercomputers
supercomputer
supercomputings
supercomputing
swarm's
swarm
symlink
tRNAscan-SE's
tRNAscan-SE
tabix's
tabix
tabixpp's
tabixpp
taonga
tbb's
tbb
tbl2asn's
tbl2asn
templating
tmpfs
tmux's
tmux
tomo's
tomo
toolchains
toolchain
tooltips's
tooltips
tooltip's
tooltip
transcriptomes
transcriptome
trf's
trf
trimAl's
trimAl
unallocated
unimap's
unimap
unmount
unrar's
unrar
util-linux's
util-linux
validator
vcflib's
vcflib
vectorisation
verkko's
verkko
vg's
vg
walltimes
walltime
wannier90's
wannier90
wgsim's
wgsim
wheel's
wheel
whānau
wtdbg's
wtdbg
wxWidgets's
wxWidgets
x264's
x264
x265's
x265
xkbcommon's
xkbcommon
xtb's
xtb
yacrd's
yacrd
yajl's
yajl
yak's
yak
yaml-cpp's
yaml-cpp
zlib's
zlib
zstd's
zstd