ABAQUS's
ABAQUS
ABRicate's
ABRicate
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ACL
ACTC's
ACTC
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AGAT
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AGE
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ANSYS
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ANTs
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ARIBA
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ASAGI
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ATK
ATL
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AUGUSTUS
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Abseil
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AdapterRemoval
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AdaptiveCpp
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Advisor
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AlphaFold2DB
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AlwaysIntelMKL
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Anaconda3
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Apptainer
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Armadillo
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Arrow
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Autoconf-archive
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BBMap
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BEAST
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BEDOPS
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BEDTools
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BEEF
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BGC-Bayesian-genomic-clines
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BLAST
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BLASTDB
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BLAT
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BLIS
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BRAKER
BUSCO's
BUSCO
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BWA
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Bandage
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BayPass
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BayesAss
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Bazel
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Beagle
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BiG-SCAPE
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Bifrost
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BioPP
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Bison
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BlenderPy
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Boost
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Bowtie's
Bowtie
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Bowtie2
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Bpipe
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Bracken
BreakDancer's
BreakDancer
BreakSeq2's
BreakSeq2
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Bruijn
CAE
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CCL
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CDO
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CTPL
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CapnProto
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CheckV
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Circos
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Clang
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EDTA
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EIGENSOFT
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ELPA
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ESMF
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Embree
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ExpansionHunter
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Extrae
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FALCON
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FFTW
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FFTW.MPI
FFmpeg's
FFmpeg
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FIGARO
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FLTK
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FTGL
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FastANI
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FastME
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FastQC
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FastQ_Screen
FastTree's
FastTree
File-Rename's
File-Rename
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FileSender
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Filtlong
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FimTyper
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FlexiBLAS
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Flye
Fortran
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FragGeneScan
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FreeBayes
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FreeSurfer
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FreeXL
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FriBidi
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GATK
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GCCcore
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GD
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GDAL
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GEMMA
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GEOS
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GLPK
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GLib
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GLibmm
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GMAP-GSNAP
GMP's
GMP
GNU
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GOLD
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GPAW
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GPFS
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GPU
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GRASS
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GRIDSS
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GROMACS
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GSL
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GST-plugins-base
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GStreamer
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GTDB-Tk
GTK
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GTK+
GTS's
GTS
GUIs
GUI
GUSHR's
GUSHR
Gaussian's
Gaussian
Gbps
Gdk-Pixbuf's
Gdk-Pixbuf
GeneMark
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GeneMark-ES
GenoVi's
GenoVi
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GenomeThreader
GetOrganelle's
GetOrganelle
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GlobusID
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Go
Graphviz's
Graphviz
GridRunner
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Gubbins
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HDF
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HDF5
HGX
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HISAT2
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HMMER
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HMMER2
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HybPiper
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Hypre
IBM
ICU's
ICU
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IDBA-UD
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IGV
IMPUTE's
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IOBUF
IQ-TREE's
IQ-TREE
IQmol's
IQmol
IRkernel's
IRkernel
ISA-L's
ISA-L
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ImageMagick
Infernal's
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Inspector's
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InterProScan's
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JSON
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Kent_tools
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KorfSNAP
Kraken
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Kraken2
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KronaTools
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KyotoCabinet
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LAME
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LAST
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LASTZ
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LTS
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LZO
Landcare
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LegacySystemLibs
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LibTIFF
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Libint
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Liftoff
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LittleCMS
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MAFFT
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MAGMA
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MAKER
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MATLAB
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MBIE
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MCL
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MEGAHIT
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METABOLIC
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METIS
MKL
MMseqs2's
MMseqs2
MODFLOW's
MODFLOW
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MPFR
MPI
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MSMC
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MaSuRCA
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Mahuika
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MarkerMiner
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MaxBin
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MetaBAT
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MetaEuk
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MetaGeneAnnotator
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Metashape
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Metaxa2
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Minimac3
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Minimac4
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ModDotPlot
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ModelTest-NG
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Molcas
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Molpro
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Mono
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Monocle3
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Mothur
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MrBayes
MultiQC's
MultiQC
Māui's
Māui
NAMD's
NAMD
NASM's
NASM
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NCCL
NCL's
NCL
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NCO
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NECAT
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NGS
NIWA's
NIWA
NLopt's
NLopt
NONMEM's
NONMEM
NSPR's
NSPR
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NanoComp
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NanoPlot
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Nextflow's
Nextflow
Nim's
Nim
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Nsight-Compute
Nsight-Systems's
Nsight-Systems
Nvidia
OBITools's
OBITools
OMA's
OMA
OMP
OOM
OPARI2's
OPARI2
ORCA's
ORCA
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OSPRay
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OSU-Micro-Benchmarks
OSX
OTF2's
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OnDemand
OneDrive
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OpenBabel
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OpenCV
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OpenFAST
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OpenSeesPy
OpenSlide's
OpenSlide
OrfM's
OrfM
OrthoFiller's
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OrthoMCL
Otago
PALEOMIX's
PALEOMIX
PAML's
PAML
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PAPI
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PCRE
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PDT
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PEST++'s
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PETSc
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PLINK
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PLUMED
POSIX
PRANK's
PRANK
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PROJ
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PSpaMM
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PacBio
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Pango
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ParMETIS
ParaView's
ParaView
Parallel's
Parallel
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ParallelIO
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Peregrine
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Perl
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PhyloPhlAn's
PhyloPhlAn
Pilon's
Pilon
Pletzer
PnetCDF's
PnetCDF
Porechop's
Porechop
Porechop_ABI's
Porechop_ABI
PostgreSQL's
PostgreSQL
PowerShell
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ProtHint's
ProtHint
Proteinortho's
Proteinortho
PuTTY
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PyOpenGL
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PyQt
PyTorch's
PyTorch
Python's
Python
Python-Geo's
Python-Geo
QChem's
QChem
QIIME2's
QIIME2
QUAST's
QUAST
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Qt5's
Qt5
QuantumESPRESSO's
QuantumESPRESSO
QuickTree's
QuickTree
R's
R
R-Geo's
R-Geo
R-bundle-Bioconductor's
R-bundle-Bioconductor
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RANGS-GSHHS
RAxML's
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RE2's
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RFPlasmid
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RMBlast's
RMBlast
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RSGISLib
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RapidNJ
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RepeatScout
Riskscape's
Riskscape
Roary's
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Ruby's
Ruby
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SAGE
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SHA-256
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SQLite's
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SWIG's
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Salmon
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ScaLAPACK
Schrödinger
SeisSol's
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SortMeRNA
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Structure
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Subversion
SuiteSparse's
SuiteSparse
SuperLU's
SuperLU
Supernova's
Supernova
Synda
Szip's
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TEtranscripts's
TEtranscripts
TMHMM's
TMHMM
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TRES
TSEBRA's
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TURBOMOLE's
TURBOMOLE
TWL-NINJA's
TWL-NINJA
TZ
Tamaki
Tcl's
Tcl
TensorFlow's
TensorFlow
TensorRT's
TensorRT
Theano's
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Tk
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TreeMix
TrimGalore's
TrimGalore
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Tuakiri
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UI
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UTF
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VM
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VTK's
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VTune
Valgrind's
Valgrind
VarScan's
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Velvet
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VelvetOptimiser
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ViennaRNA
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Vim
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VirHostMatcher
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VirSorter
VirtualGL's
VirtualGL
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WAAFLE
WCRP
WRF
WSL
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Whenua
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Winnowmap
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Wise2
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XMDS2
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Xeon
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Xming
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Zealander
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Zip
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ant
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argtable
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arpack-ng
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at-spi2-core
attr's
attr
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azul-zulu
backplane
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bamUtil
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barrnap
basecaller
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bcl2fastq2
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beagle-lib
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best
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binutils
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breseq
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bsddb3
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checksum
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chewBBACA
chiplets
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config
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cromwell
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ctrl
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cuDNN
customisable
customisations
cutadapt's
cutadapt
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cwltool
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cyvcf2
dadi's
dadi
dammit's
dammit
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datasets
dataset
deepTools's
deepTools
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double-conversion
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dtcmp
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duplex-tools
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eDNA
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easi
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ectyper's
ectyper
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edlib
eggnog-mapper's
eggnog-mapper
emmtyper's
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ensmallen's
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entrez-direct
exes
exe
executables
executable
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exonerate
expat's
expat
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fastStructure
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fastq-tools
fcGENE's
fcGENE
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filesystem
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fineSTRUCTURE
flatbuffers's
flatbuffers
flex's
flex
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fmt
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fontconfig
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funcx-endpoint
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genomics
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giflib's
giflib
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git's
git
glob
globbing
globus-automate-client's
globus-automate-client
globus-compute-endpoint's
globus-compute-endpoint
gmsh's
gmsh
gnuplot's
gnuplot
gompi's
gompi
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google-sparsehash
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googletest
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gperf
grive2's
grive2
gsort's
gsort
h5pp's
h5pp
haplocheck's
haplocheck
hapū
help2man's
help2man
hifiasm's
hifiasm
hooks's
hooks
hunspell's
hunspell
hwloc's
hwloc
hyperthreaded
hyperthreading
hypothesis's
hypothesis
icc's
icc
iccifort's
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ifort's
ifort
iimpi's
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imkl's
imkl
imkl-FFTW's
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impalajit's
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impi's
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in situ
info's
info
inodes
inode
intel's
intel
intel-compilers's
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iofbf's
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iompi's
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ipyrad's
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ispc's
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iwi
jbigkit's
jbigkit
jcvi's
jcvi
jemalloc's
jemalloc
jq's
jq
json-c's
json-c
jvarkit's
jvarkit
kaitiaki
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kalign2's
kalign2
kallisto's
kallisto
kia
kineto's
kineto
kma's
kma
libFLAME's
libFLAME
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libdrm's
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libepoxy
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libevent
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libgit2's
libgit2
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libglvnd
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libgtextutils's
libgtextutils
libiconv's
libiconv
libio
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libjpeg-turbo
libpciaccess's
libpciaccess
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libpmi
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libpng
libreadline's
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lp_solve
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lwgrp
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mapDamage
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mosdepth
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mpcci
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mpifileutils
muParser's
muParser
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namespace
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nano
nanoQC's
nanoQC
nanofilt's
nanofilt
nanoget's
nanoget
nanomath's
nanomath
nanopolish's
nanopolish
nav
ncbi-vdb's
ncbi-vdb
ncurses's
ncurses
ncview's
ncview
ne's
ne
nearline's
nearline
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netCDF
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netCDF-C++4
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netCDF-Fortran
nga
ngā
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nseg
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nsync
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nullarbor
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numactl
objects's
objects
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ora
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padloc
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pairtools
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pauvre
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pggb
pgge's
pgge
phonopy's
phonopy
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phyx's
phyx
picard's
picard
pigz's
pigz
pixman's
pixman
pod5's
pod5
pplacer's
pplacer
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prepend
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preseq's
preseq
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procurement
prodigal's
prodigal
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profilers's
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profiler
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programmes
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prokka's
prokka
protobuf's
protobuf
psmc's
psmc
pstoedit's
pstoedit
pullseq's
pullseq
purge_dups's
purge_dups
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purge_haplotigs
pv's
pv
pyani's
pyani
pycoQC's
pycoQC
pymol-open-source's
pymol-open-source
pyspoa's
pyspoa
qcat's
qcat
rDock's
rDock
randfold's
randfold
rasusa's
rasusa
razers3's
razers3
rclone's
rclone
re2c's
re2c
recurse
refs's
refs
repos
repo
reproducibility
requeued
rkcommon's
rkcommon
rnaQUAST's
rnaQUAST
rollout
rsync
runtime
rust-fmlrc's
rust-fmlrc
samblaster's
samblaster
samclip's
samclip
savvy's
savvy
sbt's
sbt
sc-RNA's
sc-RNA
scalable
screen_assembly's
screen_assembly
seqmagick's
seqmagick
seqtk's
seqtk
setgid
shrinkwrap's
shrinkwrap
simuG's
simuG
sismonr's
sismonr
skani's
skani
slow5tools's
slow5tools
smafa's
smafa
smoove's
smoove
snakemake's
snakemake
snaphu's
snaphu
snappy's
snappy
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snpEff's
snpEff
somalier's
somalier
spaln's
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spdlog's
spdlog
splat's
splat
spoa's
spoa
sratoolkit's
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stderr
stdin
stdout
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sublime's
sublime
sudo
supercomputers
supercomputer
supercomputings
supercomputing
swarm's
swarm
swissknife's
swissknife
symlink
tRNAscan-SE's
tRNAscan-SE
tabix's
tabix
tabixpp's
tabixpp
taonga
tbb's
tbb
tbl2asn's
tbl2asn
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tmux
toolchains
toolchain
tooltips's
tooltips
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tooltip
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transcriptome
trf's
trf
trimAl's
trimAl
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unimap's
unimap
unmount
unrar's
unrar
util-linux's
util-linux
validator
vcflib's
vcflib
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verkko
vg's
vg
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walltime
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wgsim
wheel's
wheel
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wtdbg
wxWidgets's
wxWidgets
x264's
x264
x265's
x265
xkbcommon's
xkbcommon
xtb's
xtb
yacrd's
yacrd
yajl's
yajl
yak's
yak
yaml-cpp's
yaml-cpp
zlib's
zlib
zstd's
zstd